Citing PTGL


For citation of the PTGL or its underlying software, VPLG, please use:

Wolf JN, Keßler M, Ackermann J, Koch I (2020). PTGL: extension to graph-based topologies of cryo-EM data for large protein structures. Bioinformatics. (DOI 10.1093/bta706 at Oxford University Press).

You can find the BibTex entry for this publication here:

@article{wolf2020ptgl,
title={{PTGL: extension to graph-based topologies of cryo-EM data for large protein structures}},
author={{Wolf, Jan Niclas and Ke{\ss}ler, Marcus and Ackermann, J{\"o}rg and Koch, Ina}},
journal={Bioinformatics},
year={2020}
}

BibTex entries for older publications:

@article{koch2018protein,
title={Protein super-secondary structure and quaternary structure topology: theoretical description and application},
author={Koch, Ina and Sch{\"a}fer, Tim},
journal={Current opinion in structural biology},
volume={50},
pages={134--143},
year={2018},
publisher={Elsevier}
}

@article{schafer2015new,
title={The new protein topology graph library web server},
author={Sch{\"a}fer, Tim and Scheck, Andreas and Brune{\ss}, Daniel and May, Patrick and Koch, Ina},
journal={Bioinformatics},
pages={btv574},
year={2015},
publisher={Oxford Univ Press}
}

@InProceedings{schfer_et_al:OASIcs:2012:3722,
author = {Tim Sch{\"a}fer and Patrick May and Ina Koch},
title = {{Computation and Visualization of Protein Topology Graphs Including Ligand Information}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {108--118},
series = {OpenAccess Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {Sebastian B{\"o}cker and Franziska Hufsky and Kerstin Scheubert and Jana Schleicher and Stefan Schuster},
publisher = {Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik},
address = {Dagstuhl, Germany},
URL = {http://drops.dagstuhl.de/opus/volltexte/2012/3722},
URN = {urn:nbn:de:0030-drops-37226},
doi = {http://dx.doi.org/10.4230/OASIcs.GCB.2012.108},
annote = {Keywords: protein structure, graph theory, ligand, secondary structure, protein ligang graph}
}

Please use one of this BibTeX-entries for citing.