graph [ id 1 label "VPLG Protein Graph 7tim-A-albe[21,13]" comment "pdb_mol_id=1|keywords=INTRAMOLECULAR OXIDOREDUCTASE|pdb_mol_name=TRIOSEPHOSPHATE ISOMERASE|graphtype=albe|pdb_all_chains=A, B|resolution=1.9|date=23-APR-91|pdb_ec_number=5.3.1.1|header=INTRAMOLECULAR OXIDOREDUCTASE|pdb_org_common=BAKER'S YEAST|title=STRUCTURE OF THE TRIOSEPHOSPHATE ISOMERASE-PHOSPHOGLYCOLOHYDROXAMATE COMPLEX: AN ANALOGUE OF THEINTERMEDIATE ON THE REACTION PATHWAY|pdbid=7tim|experiment=X-RAY DIFFRACTION|chainid=A|graphclass=protein graph|pdb_org_sci=SACCHAROMYCES CEREVISIAE|" directed 0 isplanar 0 creator "PLCC version 0.98.1" pdb_id "7tim" chain_id "A" graph_type "albe" is_protein_graph 1 is_folding_graph 0 is_SSE_graph 1 is_AA_graph 0 is_all_chains_graph 0 node [ id 0 label "0-E" num_in_chain 1 num_residues 6 pdb_res_start "A-5- " pdb_res_end "A-10- " dssp_res_start 4 dssp_res_end 9 pdb_residues_full "A-5- ,A-6- ,A-7- ,A-8- ,A-9- ,A-10- " aa_sequence "FFVGGN" sse_type "E" fg_notation_label "e" ] node [ id 1 label "1-H" num_in_chain 2 num_residues 13 pdb_res_start "A-17- " pdb_res_end "A-29- " dssp_res_start 16 dssp_res_end 28 pdb_residues_full "A-17- ,A-18- ,A-19- ,A-20- ,A-21- ,A-22- ,A-23- ,A-24- ,A-25- ,A-26- ,A-27- ,A-28- ,A-29- " aa_sequence "KQSIKEIVERLNT" sse_type "H" fg_notation_label "h" ] node [ id 2 label "2-E" num_in_chain 3 num_residues 6 pdb_res_start "A-36- " pdb_res_end "A-41- " dssp_res_start 35 dssp_res_end 40 pdb_residues_full "A-36- ,A-37- ,A-38- ,A-39- ,A-40- ,A-41- " aa_sequence "VEVVIC" sse_type "E" fg_notation_label "e" ] node [ id 3 label "3-H" num_in_chain 4 num_residues 10 pdb_res_start "A-44- " pdb_res_end "A-53- " dssp_res_start 43 dssp_res_end 52 pdb_residues_full "A-44- ,A-45- ,A-46- ,A-47- ,A-48- ,A-49- ,A-50- ,A-51- ,A-52- ,A-53- " aa_sequence "ATYLDYSVSL" sse_type "H" fg_notation_label "h" ] node [ id 4 label "4-E" num_in_chain 5 num_residues 5 pdb_res_start "A-59- " pdb_res_end "A-63- " dssp_res_start 58 dssp_res_end 62 pdb_residues_full "A-59- ,A-60- ,A-61- ,A-62- ,A-63- " aa_sequence "VTVGA" sse_type "E" fg_notation_label "e" ] node [ id 5 label "5-H" num_in_chain 6 num_residues 6 pdb_res_start "A-80- " pdb_res_end "A-85- " dssp_res_start 79 dssp_res_end 84 pdb_residues_full "A-80- ,A-81- ,A-82- ,A-83- ,A-84- ,A-85- " aa_sequence "VDQIKD" sse_type "H" fg_notation_label "h" ] node [ id 6 label "6-E" num_in_chain 7 num_residues 4 pdb_res_start "A-90- " pdb_res_end "A-93- " dssp_res_start 89 dssp_res_end 92 pdb_residues_full "A-90- ,A-91- ,A-92- ,A-93- " aa_sequence "WVIL" sse_type "E" fg_notation_label "e" ] node [ id 7 label "7-H" num_in_chain 8 num_residues 6 pdb_res_start "A-96- " pdb_res_end "A-101- " dssp_res_start 95 dssp_res_end 100 pdb_residues_full "A-96- ,A-97- ,A-98- ,A-99- ,A-100- ,A-101- " aa_sequence "SERRSY" sse_type "H" fg_notation_label "h" ] node [ id 8 label "8-H" num_in_chain 9 num_residues 13 pdb_res_start "A-106- " pdb_res_end "A-118- " dssp_res_start 105 dssp_res_end 117 pdb_residues_full "A-106- ,A-107- ,A-108- ,A-109- ,A-110- ,A-111- ,A-112- ,A-113- ,A-114- ,A-115- ,A-116- ,A-117- ,A-118- " aa_sequence "DKFIADKTKFALG" sse_type "H" fg_notation_label "h" ] node [ id 9 label "9-E" num_in_chain 10 num_residues 6 pdb_res_start "A-122- " pdb_res_end "A-127- " dssp_res_start 121 dssp_res_end 126 pdb_residues_full "A-122- ,A-123- ,A-124- ,A-125- ,A-126- ,A-127- " aa_sequence "GVILCI" sse_type "E" fg_notation_label "e" ] node [ id 10 label "10-H" num_in_chain 11 num_residues 5 pdb_res_start "A-131- " pdb_res_end "A-135- " dssp_res_start 130 dssp_res_end 134 pdb_residues_full "A-131- ,A-132- ,A-133- ,A-134- ,A-135- " aa_sequence "LEEKK" sse_type "H" fg_notation_label "h" ] node [ id 11 label "11-H" num_in_chain 12 num_residues 15 pdb_res_start "A-139- " pdb_res_end "A-153- " dssp_res_start 138 dssp_res_end 152 pdb_residues_full "A-139- ,A-140- ,A-141- ,A-142- ,A-143- ,A-144- ,A-145- ,A-146- ,A-147- ,A-148- ,A-149- ,A-150- ,A-151- ,A-152- ,A-153- " aa_sequence "TLDVVERQLNAVLEE" sse_type "H" fg_notation_label "h" ] node [ id 12 label "12-E" num_in_chain 13 num_residues 5 pdb_res_start "A-160- " pdb_res_end "A-164- " dssp_res_start 159 dssp_res_end 163 pdb_residues_full "A-160- ,A-161- ,A-162- ,A-163- ,A-164- " aa_sequence "VVVAY" sse_type "E" fg_notation_label "e" ] node [ id 13 label "13-H" num_in_chain 14 num_residues 3 pdb_res_start "A-167- " pdb_res_end "A-169- " dssp_res_start 166 dssp_res_end 168 pdb_residues_full "A-167- ,A-168- ,A-169- " aa_sequence "VWA" sse_type "H" fg_notation_label "h" ] node [ id 14 label "14-H" num_in_chain 15 num_residues 19 pdb_res_start "A-178- " pdb_res_end "A-196- " dssp_res_start 177 dssp_res_end 195 pdb_residues_full "A-178- ,A-179- ,A-180- ,A-181- ,A-182- ,A-183- ,A-184- ,A-185- ,A-186- ,A-187- ,A-188- ,A-189- ,A-190- ,A-191- ,A-192- ,A-193- ,A-194- ,A-195- ,A-196- " aa_sequence "PEDAQDIHASIRKFLASKL" sse_type "H" fg_notation_label "h" ] node [ id 15 label "15-H" num_in_chain 16 num_residues 6 pdb_res_start "A-198- " pdb_res_end "A-203- " dssp_res_start 197 dssp_res_end 202 pdb_residues_full "A-198- ,A-199- ,A-200- ,A-201- ,A-202- ,A-203- " aa_sequence "DKAASE" sse_type "H" fg_notation_label "h" ] node [ id 16 label "16-E" num_in_chain 17 num_residues 4 pdb_res_start "A-206- " pdb_res_end "A-209- " dssp_res_start 205 dssp_res_end 208 pdb_residues_full "A-206- ,A-207- ,A-208- ,A-209- " aa_sequence "ILYG" sse_type "E" fg_notation_label "e" ] node [ id 17 label "17-H" num_in_chain 18 num_residues 4 pdb_res_start "A-217- " pdb_res_end "A-220- " dssp_res_start 216 dssp_res_end 219 pdb_residues_full "A-217- ,A-218- ,A-219- ,A-220- " aa_sequence "AVTF" sse_type "H" fg_notation_label "h" ] node [ id 18 label "18-E" num_in_chain 19 num_residues 4 pdb_res_start "A-228- " pdb_res_end "A-231- " dssp_res_start 227 dssp_res_end 230 pdb_residues_full "A-228- ,A-229- ,A-230- ,A-231- " aa_sequence "GFLV" sse_type "E" fg_notation_label "e" ] node [ id 19 label "19-H" num_in_chain 20 num_residues 4 pdb_res_start "A-233- " pdb_res_end "A-236- " dssp_res_start 232 dssp_res_end 235 pdb_residues_full "A-233- ,A-234- ,A-235- ,A-236- " aa_sequence "GASL" sse_type "H" fg_notation_label "h" ] node [ id 20 label "20-H" num_in_chain 21 num_residues 6 pdb_res_start "A-240- " pdb_res_end "A-245- " dssp_res_start 239 dssp_res_end 244 pdb_residues_full "A-240- ,A-241- ,A-242- ,A-243- ,A-244- ,A-245- " aa_sequence "FVDIIN" sse_type "H" fg_notation_label "h" ] edge [ source 0 target 2 label "p" spatial "p" ] edge [ source 0 target 18 label "p" spatial "p" ] edge [ source 1 target 3 label "p" spatial "p" ] edge [ source 2 target 4 label "p" spatial "p" ] edge [ source 4 target 6 label "p" spatial "p" ] edge [ source 6 target 9 label "p" spatial "p" ] edge [ source 8 target 11 label "p" spatial "p" ] edge [ source 9 target 11 label "m" spatial "m" ] edge [ source 9 target 12 label "p" spatial "p" ] edge [ source 11 target 14 label "p" spatial "p" ] edge [ source 12 target 16 label "p" spatial "p" ] edge [ source 14 target 16 label "m" spatial "m" ] edge [ source 16 target 18 label "p" spatial "p" ] ]